Molecular Biology Tools
Database retrieval/submission
Homology searching, prediction and testing
Subject related Molecular Biology pages
Other Molecular Biology resources/jumpstations
Database retrieval/submission
Sequence Retrieval System Nijmegen has been discontinued. Use SRS at BioAsp-NL instead!
Alternatively you can visit the SRS at EBI-UK
FREE! PubMed (MEDLINE) searching for bibliographic references, abstracts etc.
Patent (info) retrieval by IPN (Inellectual Property Network) hosted at IBM
CABRI - Common Access to Biological Resources and Information
CABRI includes 26 catalogues from some of the most known European
culture collections, including BCCM, CABI, CBS, DSMZ and ECACC, for
a total of more than 86,000 strains.
Organism types are fungi, yeasts, cell lines, bacteria, archea,
plasmids, DNA probes, plant cells and viruses, phages.
Search in the HUGE collection of Protocols-online
Activate SEQUENCE ALERTING SYSTEMS for automated (homol.) searching in NEWLY submitted sequences!
-- BlastP/BlastX based Alerting system at Heidelberg
-- All text or specified searches at MIPS Alert
-- All text and advanced searches (sequence/pattern) at Expasy using SwissShop Alert
-- Description based alerting system at EMBL MEDLINE Alert
WebIn is the WWW Sequence Submission Page for EMBL ('Genbank/EMBL/DDBJ')
BankIt Simple Sequence Submission at NCBI
European Patent Office or query the espace Patent Database (worldwide/european patents)
3Dee Database of (3D) protein domain definitions
The DOGS database of genome sizes
The Cell Line Data Base
NIA Aging Cell Repository
NIGMS Human Genetic Mutant Cell Repository
ADA Cell Repository Maturity Onset Diabetes Collection
HBDI Cell Repository Juvenile Diabetes Collection
NIMH National Cell Repository
Search the American Type Culture Collection (ATCC) catalogue
Transmembrane Protein Database, TMProtBASE (Zwitserland)
GenEx Public database to distribute and visualise gene expression data from MICRO-ARRAYS, Aftymetrix chips, and related technologies
Search for Biotechniques and protocols
Look in the KNOCKOUT database
Search the ImmunoGenetics Database (IMGT also available via SRS-WWW)
Collection of biomedically interesting (HOT) molecules at HotMolecBase (i.e. Prions....)
Codon usage tables for different species, CodonUsageDatabase WWW (Japan) or Retrieve the complete form (UK mirror)
New Nucleotide Sequence Submission Tool from NCBI (GenBank/EMBL/DDBJ)
Mouse Genome Database with genetic and phenotypic data
Most commonly used vectors in the Vector Sequence database
Catalog of human genes and gentic disorders; OMIM at NCBI
The Ion Channel Mutant Database
Homology searching, prediction and testing
BLAST-BEAUTY - performs BLAST searches using BEAUTY-X algorythm at BCM-launcher
BLAST2 (Fast!?) at EMBL (EBI)
FASTA3 (Fast!? at EMBL (EBI)
S&W at EMBL (EBI)
Genome Monitoring Table at EMBL (EBI)
BLAST service at NCBI for i.e. unreleased Pseudomonas genomic data
Sequence homology (incl. gapped alignments!) searching, Blast2 WWW (Germany)
FFffffaaasssttt Protein sequence homology searching: BLITZ (EBI England!)
3D Structure prediction (using sequencehomology) at SWISS-Model
NetGene2 Prediction of Intron splice sites used in human/C.elegans/A.thaliana @ CBS
Scan your protein sequence for sites, PROSITE (Zwitserland)
Or try scanning your protein sequence for sites at PROSITE-Scan (Zwitserland)
Biocellerator homology search
Two Dimensional Polyacrylamide Gel Electrophoresis Database 2DPage (Zwitserland)
REPRO for recognizing protein sequence repeats
Test an Antibody Sequence against the Kabat Database, AbCheck (UK)
Database of Expressed Sequence Tags, dbEST (UK)
The Eukaryotic Promoter Database, EPD (Germany) or EPD (Japan)
E. coli Database Collection, ECDC (Germany)
TagIdent search for proteins of similar size / isoelectric point
The DSC Protein Secondary Structure Prediction web site
More about Protein Secondary Structure Prediction
Transmembrane Regions and Orientation in Protein Sequences Prediction, TMR predict (Zwitserland)
Signalp for prediction of the signal peptide cleavage sites
Searching TRANSFAC 3.2 database on transciption factors and binding sites at PatSearch
Molecular and Genetic Database for Drosophila, FlyBase
Predict Internal Exons, Gene Structure, and Splicing Sites in DNA; GeneFind
Prediction of Mucin type O-glycosylation sites
GeneFind Server for protein family identification
ProClass 1.1 Server for protein family info retrieval
Molecular Biology pages about one subject
On-line Restriction enzyme analysis and mapping
The Human Chromosome 1 WWW Page or the Genetic map
Gene Cloning and Analysis
Science's 'The Human Transcript Map'
Check out the NEW GENE discovery page (or at European Mirror site)
Try finding it in Protocols on the Net
LINKAGE analysis for large and complex PEDIGREES Homepage or download
Visit the Web resource for Proteases and Protease Inhibitors
The IUPAC Amino Acid and Peptide Nomenclature
All the Virology on the Web. (Including JOBS, Pictures, and Resources!)
The Antibody Resource Page
Visit the BIODIDAC image database for teaching biology
Fundamentals of cell structure
Cell Biology Lab manual
The IUPAC nomenclature (+ polypeptide/polynucleotide/polysaccharide chains)
The Intergrins homepage!
Saccharomyces genome database ;the culmination of the yeast genome project
All about NeuroSciences on the Internet
Other Molecular Biology resources/jumpstations
ZZzzap to the PCR Jump Station
Molecular Biology Jump Station
Genetics Jump Station
Microbiology Jump Station
Molecular Biology Protocols on the WWW
NCBI, home of BLAST, GenBank, Entrez, dbEST, dbSTS, and UniGene
Visit the collection of Molecular Biology Tools of Pedro at NCBI
Expasy Molecular Biology Server. Home of Swiss-prot and Swiss-Model
Internet for the Molecular Biologist {Info+links}
Introduction to Molecular Biology
The Science Guide
English Language Help for biologists
Find biology related webpages at Bio-wURLd
Find it all in the Yellow Pages of Molecular Biology Software